PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000317853
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 684aa    MW: 77249 Da    PI: 9.4314
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000317853genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-05561583123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y Cp+C+  F  ++nL  H++ H
  MDP0000317853 561 YICPKCPCEFVFSENLDAHMSEH 583
                    89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280563583IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MEIPDDFCSY VSAPATPGRY CGSANNNVFF FSVPTSPRKR TISSTYDDYP TPPMTPYHDA  60
NSELGDFEFD TSNSFNLGSV DNVTSQQVKD LFDRKQREKR QTMAFADDLF CEGKVMPLAP  120
PLKLPPRLGQ KYTNQSPTPS TPRSPSSGIK MRVLHRRLWN DDFDPFMVAL QHVREEEKRG  180
KAETEARDIS DLNDQQNKXT GLQTPIHSPS VNSPSLLQSP TRLALPRGLE FARQVRLVGM  240
ELDHSERXSR PKLETETPKN NIAQESGGPC KKQTKGQKIR RLLLSALFGK PDDEDKKRKX  300
QTSEILKKPT FLRRLSLKSG RSTSCKAEKR ISNQLTKTTL VQFRPRLLLC MGYRASTDTP  360
PENPSENCRE RNHTVHFATT VSTSRSSGSN DRPPSKKKPM QGMSQLTLSQ FVAASXRTQV  420
NADWSQTIRL QKIENSLLWF MQPSFSPASE VSQYCSYGPS SHNQLRDPIN LNTIEFRGNK  480
EFARTPVSVS YPDSNFSFFT WNEPHLYMER SNLSELQSYK GSNPSVNLLA AQQDKKVGSN  540
PSLTDRIGTK RNLNKSKYTL YICPKCPCEF VFSENLDAHM SEHQRIEDQT NRMRSLDTAF  600
RLIGSECPLV HSQFIWNLEH LAGQKPEASS PNSDTMASSE DREKEDMARE QEMPLSSSAE  660
IKGSPSTKLD IKAVAISSII KSIK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009350441.10.0PREDICTED: uncharacterized protein LOC103941966
TrEMBLM5WLJ11e-122M5WLJ1_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1135022